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Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples - Nature Protocols

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Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples - Nature Protocols

Phylogenetic trees are a powerful means to display the evolutionary history of species, pathogens and, more recently, individual cells of the human body. Whole-genome sequencing of laser capture microdissections or expanded stem cells has allowed the discovery of somatic mutations in clones, which can be used as natural barcodes to reconstruct the developmental history of individual cells. Here we describe Sequoia, our pipeline to reconstruct lineage trees from clones of normal cells.

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Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples - Nature Protocols

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Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples - Nature Protocols

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